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GrainGenes Marker Report: MWG584

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Locus	MWG584
Type	CAPS RFLP
Synonym	Synonym MWG584
Chromosome	3 (3H) 3H
Chromosome Arm	3HS
Map	[ Hide all but 1 of 23 ] Barley-Consensus-3H -16.5 Barley-Consensus2-3H 21.3 Barley-ConsensusFHB-3H 37.16 Barley-ConsensusFHB-5H 135.19 Hordeum-Bins-3H 35.1 Hordeum-Consensus2005-SNP-3H 27.691 Hordeum-Consensus2006-DArT-3H 43.3 Hordeum-Consensus2007-SSR-3H 30.97 Hordeum-Graner1-3H 61.5 Hordeum-IxF-SSR-3H 0 Hordeum-NABGMP1-3H 29.3 Hordeum-Physical-RFLP-3H 62.4 Hordeum-QTLConsensus-Abiotic-3H 27.69 Hordeum-QTLConsensus-Agronomic-3H 27.69 Hordeum-StMo-SNP-3H 28.36 Hordeum-SxM-base-3H 29.8 Hordeum-SxM-FeedQTL-3H 29.3 Hordeum-SxM-SSAP-3H 29.5 Hordeum-SxM-SSR-3H 27.1 Hordeum-TxE-3H 39.6 Hv-Consensus2006-Marcel-3H 30.97 Hv-Integrated2009-3H 42.4 Hv-L94/Vada-2006-3H 40.36
	[ Show Nearby Loci ]
QTL with Locus Marker	MetaQ.HD_5H_5
Map Data	Barley consensus [ Show all 23 ]
Species	Hordeum vulgare
Probe	MWG584
Reference	Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Rodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Li JZ et al. (2003) Development and genetic mapping of 127 new microsatellite markers in barley Theoretical and Applied Genetics 107:1021-1027.
Data Source	Blake, Tom 05.04.19
Remark	Number of populations contributing to the placement of MWG584 in the Barley, Consensus 2006 DArT maps = 1 Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = L9Oregon Wolfe Barleys x Vada,Steptoe x Morex,Igri x Franka Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : L94 x Vada; Oregon Wolfe Dom x Rec; Steptoe x Morex; Igri x Franka Locus in 'Barley, Consensus 2007, SSR' was a BIN marker in 'Barley, Consensus 2006, Marcel'
Possible Orthologs	Xmwg584 Xmwg584-3 Xmwg584-3A Xmwg584-4A.1 Xmwg584-4A.2
Probe	MWG584
Locus	Xmwg584-3 [ Show all 6 ]
Synonym	Synonym HAR35_23373 HAR35_30482
Reference	Marcel TC et al. (2007) A high-density consensus map of barley to compare the distribution of QTLs for partial resistance to Puccinia hordei and of defence gene homologues. Theoretical and Applied Genetics 114:487-500. Graner A et al. (1991) Construction of an RFLP map of barley Theoretical and Applied Genetics 83:250-256.
Remarks	Restriction Enzyme for CAPS marker is Stu I
Type	Genomic STS
PCR primers	5' aaggcaagattggacgaggttt 3' 5' aaggcaagattggacgaggttt 3' 5' ttggaggagagcggaagagat 3' 5' ttggaggagagcggaagagat 3'
STS primers	5' GTATTCTTGGAGGAGAGCGG 5' CGAGGTTTACCCTGGAGACG
STS size	365
Amplification Conditions	5 min at 94 deg C; 35 cycles with 30 sec at 94 deg C, 30 sec at 58 deg C, and 1 min at 72 deg C; and a final extension step of 7 min at 72 deg C
Sequence	AJ234524 AJ234523 MWG584-5 MWG584-3
Linkage Group	3H
Insert Enzyme	PstI
Source Species	Hordeum vulgare
Insert Size	1.9