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GrainGenes Marker Report: MWG618

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Locus	MWG618
Type	RFLP STS
Synonym	Synonym MWG618
Chromosome	5H
Map	[ Hide all but 1 of 15 ] Barley-Consensus2-5H 22.8 Hordeum-Bins-5H 4 Hordeum-Consensus2005-SNP-5H 8.733 Hordeum-Graner2-5H 9.9 Hordeum-OWB-2004-5H 3.3 Hordeum-OWB-2005-5H 6.2 Hordeum-OWB-5H 0 Hordeum-OWB-OPA2008-5H 21.426 Hordeum-OWB-SNP-5H 48.09 Hordeum-Physical-RFLP-5H 9.9 Hordeum-QTLConsensus-Abiotic-5H 8.73 Hordeum-QTLConsensus-Agronomic-5H 8.73 Hv-Consensus2006-Marcel-5H 8.55 Hv-Integrated2009-5H 12.2 Hv-L94/Vada-2006-5H 5.46
	[ Show Nearby Loci ]
Map Data	Barley consensus 2 [ Show all 15 ]
Species	Hordeum vulgare
Probe	MWG618
Reference	Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source	Kleinhofs, Andris
Remark	This marker is a Binlocus in the Hordeum-Bins maps, i.e. a marker mapped in other crosses and located to the Steptoe x Morex bin Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = L9Oregon Wolfe Barleys x Vada,Oregon Wolfe Barleys,Igri x Franka Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : L94 x Vada; Oregon Wolfe Dom x Rec; Igri x Franka
Possible Orthologs	MWG618-5H
Probe	MWG618
Locus	MWG618 MWG618-5H
Reference	Marcel TC et al. (2007) A high-density consensus map of barley to compare the distribution of QTLs for partial resistance to Puccinia hordei and of defence gene homologues. Theoretical and Applied Genetics 114:487-500.
Type	Genomic STS
PCR primers	5' gccgctaaaacacatcaaac 3' 5' gccgctaaaacacatcaaac 3' 5' tattttcagtcccgcacac 3' 5' tattttcagtcccgcacac 3'
STS primers	5' TGATTGTATCGGATGATTGC 5' AGCTGAGAAATGAAGAAGGG
STS size	180
Amplification Conditions	5 min at 94 deg C; 35 cycles with 30 sec at 94 deg C, 30 sec at 65 deg C, and 1 min at 72 deg C; and a final extension step of 7 min at 72 deg C
Sequence	AJ234539 AJ234538 MWG618-5 MWG618-3
Insert Enzyme	PstI
Source Species	Hordeum vulgare