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GrainGenes Marker Report: MWG878

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Locus	MWG878
Type	RFLP
Chromosome	2H
Chromosome Arm	2HS
Map	Barley-Consensus-2H -54.6 [ Show all 16 ]
	[ Show Nearby Loci ]
QTL with Locus Marker	QTil.TyVo-2H.1
Map Data	Barley consensus [ Show all 18 ]
Species	Hordeum vulgare
Probe	MWG878
Reference	[ Hide all but 1 of 6 ] Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Rodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184. Li JZ et al. (2003) Development and genetic mapping of 127 new microsatellite markers in barley Theoretical and Applied Genetics 107:1021-1027. Mesfin A et al. (2003) Quantitative trait loci for fusarium head blight resistance in barley detected in a two-rowed by six-rowed population Crop Science 43:307-318.
Remark	Number of populations contributing to the placement of MWG878 in the Barley, Consensus 2006 DArT maps = 1 Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex,Igri x Franka Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex; Igri x Franka Locus in 'Barley, Consensus 2007, SSR' was a BIN marker in 'Barley, Consensus 2006, Marcel'
Possible Orthologs	MWG878-2H [ Show all 7 ]
Probe	MWG878
Locus	MWG878 [ Show all 8 ]
Synonym	Synonym HAR35_11279 HAR35_28024 HAR35_45298
Type	Genomic STS
STS primers	5' CTGTCTGCTTGTGCAAATGG 5' GCTTGAATCTGGTATGGTGC
STS size	272
Amplification Conditions	STS annealing temperature 52-55 oC
Sequence	AJ234611 AJ234610 MWG878-5 MWG878-3
Linkage Group	2H
Insert Enzyme	PstI
Source Species	Hordeum vulgare
Insert Size	1.8