Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: MWG882

[Submit comment/correction]

Locus	MWG882
Type	RFLP STS
Synonym	Synonym MWG882A
Chromosome	2H
Chromosome Arm	2HL
Map	[ Hide all but 1 of 9 ] Barley-Consensus-2H 25.2 Barley-Consensus2-2H 92.6 Barley-ConsensusFHB-2H 97.81 Hordeum-AxK-2H 96.4 Hordeum-Consensus2007-SSR-2H 100.5 Hordeum-Graner2-2H 120.6 Hordeum-HxT-base-2H 142.1 Hv-Consensus2006-Marcel-2H 100.5 Hv-Integrated2009-2H 95.3
	[ Show Nearby Loci ]
Map Data	Barley consensus [ Show all 9 ]
Species	Hordeum vulgare
Probe	MWG882
Reference	Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091.
Remark	Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Oregon Wolfe Barleys,Igri x Franka Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Oregon Wolfe Dom x Rec; Igri x Franka Locus in 'Barley, Consensus 2007, SSR' was a BIN marker in 'Barley, Consensus 2006, Marcel'
Possible Orthologs	MWG882A MWG882a-2H MWG882B
Probe	MWG882
Locus	MWG882 MWG882A MWG882B MWG882a-2H
Synonym	Synonym HAR35_523
Type	Genomic STS
PCR primers	MWG882T3-3 AGATGAATCTGATGATGATGGAAGC MWG882T7-2 TCATGAGAGCCTACTTAATGTTGGG
STS primers	5' GGAAGCTGGCCAACTTGCAA 5' CTCCATGACTGACAGCAGCT
STS size	414
Amplification Conditions	STS annealing temperature 55-58 oC
Sequence	AJ234615 AJ234614 MWG882 MWG882-5 MWG882-3
Insert Enzyme	PstI
Source Species	Hordeum vulgare