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GrainGenes Marker Report: MWG949A

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Locus	MWG949A
Type	RFLP
Synonym	Synonym wst7 (Hordeum)
Chromosome	2H
Map	[ Hide all but 1 of 11 ] Hordeum-Bins-2H 166 Hordeum-Consensus2005-SNP-2H 174.568 Hordeum-OWB-2004-2H 181.1 Hordeum-OWB-2005-2H 179.6 Hordeum-OWB-2H 180.3 Hordeum-OWB-OPA2008-2H 190.092 Hordeum-OWB-SNP-2H 189.06 Hordeum-QTLConsensus-Abiotic-2H 174.57 Hordeum-QTLConsensus-Agronomic-2H 174.57 Hv-Consensus2006-Marcel-2H 156.27 Hv-Integrated2009-2H 153.5
	[ Show Nearby Loci ]
Map Data	Barley, Abiotic QTL Consensus [ Show all 11 ]
Species	Hordeum vulgare
Probe	MWG949
Associated Gene	wst7 (Hordeum)
Gene Class	White striped leaf
Reference	Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Costa JM et al. (2001) Molecular mapping of the Oregon Wolfe Barleys: a phenotypically polymorphic doubled-haploid population Theoretical and Applied Genetics 103:415-424.
Data Source	Kleinhofs, Andris
Remark	This marker is a Binlocus in the Hordeum-Bins maps, i.e. a marker mapped in other crosses and located to the Steptoe x Morex bin Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Oregon Wolfe Barleys,Igri x Franka Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Oregon Wolfe Dom x Rec; Igri x Franka
Possible Orthologs	MWG949 MWG949a-2H MWG949B Xmwg949 Xmwg949-2R
Probe for Locus	MWG949
Locus	MWG949 [ Show all 6 ]
Synonym	Synonym HAR35_19354
General Remarks	MWG949 comes from a digest of MWG950 plasmid DNA and excising the 1.8 kb fragment.
Type	Genomic STS
STS primers	5' CGGCTGGTAAATGAACTGAA 5' GGCTTCCGCTACTACGTCTT
STS size	ca. 1800
Amplification Conditions	STS annealing temperature 52-55 oC
Sequence	AJ234667 AJ234666 MWG949-5 MWG949-3
Linkage Group	2
Insert Enzyme	PstI
Source Species	Hordeum vulgare
Insert Size	1.8