Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: Nir (Hordeum)

[Submit comment/correction]

Gene	Nir (Hordeum)
Gene Class	Nitrite reductase
Locus	Nir pCIB808
Candidate Locus	Nir
Locus Associated with Gene	Nir
Type	Gene RFLP
Synonym	Synonym Nir (Hordeum)
Chromosome	6H
Chromosome Arm	6HL
Map	[ Hide all but 1 of 11 ] Barley-Consensus-6H 23.6 Barley-Consensus2-6H 92.6 Hordeum-Bins-6H 96.9 Hordeum-Consensus2005-SNP-6H 100.217 Hordeum-NABGMP2-6H 109.5 Hordeum-QTLConsensus-Abiotic-6H 100.22 Hordeum-QTLConsensus-Agronomic-6H 100.22 Hordeum-StMo-SNP-6H 91.64 Hordeum-SxM-SSR-6H 105.9 Hv-Consensus2006-Marcel-6H 86.37 Hv-Integrated2009-6H 88.1
	[ Show Nearby Loci ]
In QTL	QAa.StMo-6H
Map Data	Barley consensus [ Show all 13 ]
Probe	pCIB808
Associated Gene	Nir (Hordeum)
Candidate Gene	Nir (Hordeum)
Gene Class	Nitrite reductase
Reference	Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Li JZ et al. (2003) Development and genetic mapping of 127 new microsatellite markers in barley Theoretical and Applied Genetics 107:1021-1027.
Remark	Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Locus Associated with Gene	pCIB808
Map	Hordeum-Bins-6H 97.9
	[ Show Nearby Loci ]
Map Data	Barley, BinMap 2005
Associated Gene	Nir (Hordeum)
Gene Class	Nitrite reductase
Reference	Kleinhofs A et al. (1993) A molecular, isozyme and morphological map of the barley (Hordeum vulgare) genome Theoretical and Applied Genetics 86:705-712.
Remark	The pCIB808 RFLP/STS is a gene marker for the Nir (Hordeum) gene
Locus Candidate for Gene	Nir
Type	Gene RFLP
Synonym	Synonym Nir (Hordeum)
Chromosome	6H
Chromosome Arm	6HL
Map	[ Hide all but 1 of 11 ] Barley-Consensus-6H 23.6 Barley-Consensus2-6H 92.6 Hordeum-Bins-6H 96.9 Hordeum-Consensus2005-SNP-6H 100.217 Hordeum-NABGMP2-6H 109.5 Hordeum-QTLConsensus-Abiotic-6H 100.22 Hordeum-QTLConsensus-Agronomic-6H 100.22 Hordeum-StMo-SNP-6H 91.64 Hordeum-SxM-SSR-6H 105.9 Hv-Consensus2006-Marcel-6H 86.37 Hv-Integrated2009-6H 88.1
	[ Show Nearby Loci ]
In QTL	QAa.StMo-6H
Map Data	Barley consensus [ Show all 13 ]
Probe	pCIB808
Associated Gene	Nir (Hordeum)
Candidate Gene	Nir (Hordeum)
Gene Class	Nitrite reductase
Reference	Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Li JZ et al. (2003) Development and genetic mapping of 127 new microsatellite markers in barley Theoretical and Applied Genetics 107:1021-1027.
Remark	Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Locus	Nir (Hordeum)
Synonym	Synonym Nir

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.