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GrainGenes Marker Report: POPA1_0022

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Locus	POPA1_0022
Type	SNP
Synonym	Other name 12_10022 BOPA2_12_10022 Synonym 12_10022
Chromosome	4H
Map	Hordeum-OPAConsensus-2011-4H 95.27
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus
Species	Hordeum vulgare
Probe	HAR35_19703 i_12_10022
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_0022 Marker name in barley OPA1 = 12_10022 Original SNP name = 10654-1181 Most representative HarvEST:Barley Assembly #32 Unigene = 10654 Most representative HarvEST:Barley Assembly #35 Unigene = 19703 HarvEST Unigene 35 Probe Set = Contig13430_at; Contig13430_s_at; Contig13431_at Unigene 35 Rice Locus = LOC_Os03g08070 Description for best rice BLAST hit to Unigene 35 member = copper-transporting ATPase PAA1, putative, expressed; E value = 0 BLAST hit in the rice genome = copper-transporting ATPase PAA1, putative, expressed
Probe for Locus	HAR35_19703
Locus	POPA1_0022