GrainGenes Marker Report: POPA1_0039
Locus
POPA1_0039
Type
SNP
Chromosome
3H
Map
Barley-Core-2014_3H 164.07 Hordeum-OPAConsensus-2011-3H 179.81
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, USDA Core, 2014 Consensus
Probe
HAR35_14315
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark
[ Hide all but 1 of 7 ] Marker name in barley Pilot OPA1 = 1_0039 Most representative HarvEST:Barley Assembly #32 Unigene = 1123 Most representative HarvEST:Barley Assembly #35 Unigene = 14315 HarvEST Unigene 35 Probe Set = Contig1678_s_at; Contig1681_x_at; Contig1684_x_at Unigene 35 Rice Locus = LOC_Os04g24478 Description for best rice BLAST hit to Unigene 35 member = jasmonate-induced protein, putative; E value = 5E-31 BLAST hit in the rice genome = jasmonate-induced protein, putative
Probe for Locus
HAR35_14315
Locus
POPA1_0039 POPA2_0068
GrainGenes Marker Report: POPA1_0039
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