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GrainGenes Marker Report: POPA1_0045

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Locus	POPA1_0045
Type	SNP
Synonym	Synonym 11_10045
Chromosome	5H
Chromosome Arm	5HL
Map	Hordeum-OPA-2009-5H 131.56 Hordeum-OPA123-2008-5H 131.56 Hordeum-OPAConsensus-2011-5H 123.78
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_14193
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0045 Marker name in barley OPA1 = 11_10045 Original SNP name = 1164-2683 Most representative HarvEST:Barley Assembly #32 Unigene = 1164 Most representative HarvEST:Barley Assembly #35 Unigene = 14193 HarvEST Unigene 35 Probe Set = HI02E21u_s_at; HY03N19u_s_at Unigene 35 Rice Locus = LOC_Os03g52860 Description for best rice BLAST hit to Unigene 35 member = lipoxygenase 2, putative, expressed; E value = 0 HarvEST Unigene 35 Probe Set = HI02E21u_s_at, HY03N19u_s_at Description for best rice BLAST hit to Unigene 35 member = protein lipoxygenase 2, putative, expressed; E value = 0 BLAST hit in the rice genome = lipoxygenase 2, putative, expressed
Probe for Locus	HAR35_14193
Locus	POPA1_0045
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare