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GrainGenes Marker Report: POPA1_0071

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Locus	POPA1_0071
Type	SNP
Synonym	Other name 12_10071 BOPA2_12_10071 Synonym 12_10071
Chromosome	6H
Chromosome Arm	6HL
Map	Hordeum-OPA-2009-6H 119.02 Hordeum-OPA123-2008-6H 119.02 Hordeum-OPAConsensus-2011-6H 130.38 Hordeum-OWB-OPA2008-6H 149.926
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_14760 i_12_10071
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 1_0071 Marker name in barley OPA1 = 12_10071 Original SNP name = 1279-536 Most representative HarvEST:Barley Assembly #32 Unigene = 1279 Most representative HarvEST:Barley Assembly #35 Unigene = 14760 HarvEST Unigene 35 Probe Set = Contig1909_s_at; HI05M04r_s_at; HM01F24T_s_at Unigene 35 Rice Locus = LOC_Os10g32920 Description for best rice BLAST hit to Unigene 35 member = 60S ribosomal protein L23, putative, expressed; E value = 3E-76 Marker name in barley OPA2 = 12_10071 HarvEST Unigene 35 Probe Set = Contig1909_s_at, HI05M04r_s_at, HM01F24T_s_at Description for best rice BLAST hit to Unigene 35 member = protein 60S ribosomal protein L23, putative, expressed; E value = 3E-76 BLAST hit in the rice genome = 60S ribosomal protein L23, putative, expressed
Probe for Locus	HAR35_14760
Locus	POPA1_0071 POPA2_0128
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare