Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA1_0076

[Submit comment/correction]

Locus	POPA1_0076
Type	SNP
Chromosome	4H
Chromosome Arm	4HL
Map	Hordeum-OPA-2009-4H 87.49 Hordeum-OPA123-2008-4H 87.49
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_437
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_0076 Most representative HarvEST:Barley Assembly #32 Unigene = 1295 Most representative HarvEST:Barley Assembly #35 Unigene = 437 HarvEST Unigene 35 Probe Set = Contig1922_at; Contig1923_at; HY10F15u_s_at Unigene 35 Rice Locus = LOC_Os03g08440 Description for best rice BLAST hit to Unigene 35 member = 40S ribosomal protein SA, putative, expressed; E value = 1E-148 Original SNP name = 1295-1247 HarvEST Unigene 35 Probe Set = Contig1922_at, Contig1923_at, HY10F15u_s_at Description for best rice BLAST hit to Unigene 35 member = protein 40S ribosomal protein SA, putative, expressed; E value = 1E-148 BLAST hit in the rice genome = 40S ribosomal protein SA, putative, expressed
Probe for Locus	HAR35_437
Locus	POPA1_0076
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare