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GrainGenes Marker Report: POPA1_0081

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Locus	POPA1_0081
Type	SNP
Synonym	Synonym 11_10081
Chromosome	3H
Chromosome Arm	3HS
Map	Hordeum-OPA-2009-3H 39.45 Hordeum-OPA123-2008-3H 39.45 Hordeum-OPAConsensus-2011-3H 39.92 Hordeum-OWB-OPA2008-3H 38.459
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Probe	HAR35_555
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_0081 Marker name in barley OPA1 = 11_10081 Original SNP name = 1325-311 Most representative HarvEST:Barley Assembly #32 Unigene = 1325 Most representative HarvEST:Barley Assembly #35 Unigene = 555 HarvEST Unigene 35 Probe Set = Contig1978_at Unigene 35 Rice Locus = LOC_Os01g01060 Description for best rice BLAST hit to Unigene 35 member = 40S ribosomal protein S5, putative, expressed; E value = 1E-96 Description for best rice BLAST hit to Unigene 35 member = protein 40S ribosomal protein S5, putative, expressed; E value = 1E-96 BLAST hit in the rice genome = 40S ribosomal protein S5, putative, expressed
Probe for Locus	HAR35_555
Locus	POPA1_0081
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare