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GrainGenes Marker Report: POPA1_0089

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Locus	POPA1_0089
Type	SNP
Synonym	Synonym 12_10089
Chromosome	7H
Chromosome Arm	7HL
Map	Hordeum-OPA-2009-7H 87.97 Hordeum-OPA123-2008-7H 87.97 Hordeum-OPAConsensus-2011-7H 91.12
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_593
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 1_0089 Marker name in barley OPA1 = 12_10089 Original SNP name = 1369-1446 Most representative HarvEST:Barley Assembly #32 Unigene = 1369 Most representative HarvEST:Barley Assembly #35 Unigene = 593 HarvEST Unigene 35 Probe Set = Contig1194_at; HV09P07u_s_at Unigene 35 Rice Locus = LOC_Os06g37440 Description for best rice BLAST hit to Unigene 35 member = elongation factor 1-gamma 3, putative, expressed; E value = 0 Marker name in barley OPA2 = 12_10089 HarvEST Unigene 35 Probe Set = Contig1194_at, HV09P07u_s_at Description for best rice BLAST hit to Unigene 35 member = protein elongation factor 1-gamma 3, putative, expressed; E value = 0 BLAST hit in the rice genome = elongation factor 1-gamma 3, putative, expressed
Probe for Locus	HAR35_593
Locus	POPA1_0089
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare