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GrainGenes Marker Report: POPA1_0134

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Locus	POPA1_0134
Type	SNP
Synonym	Other name 12_10134 BOPA2_12_10134 Synonym 12_10134
Chromosome	3H
Chromosome Arm	3HL
Map	Barley, 2012 9KSNP 3H 76.3 Hordeum-OPA-2009-3H 89.31 Hordeum-OPA123-2008-3H 89.31 Hordeum-OPAConsensus-2011-3H 100.71
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_15032 i_12_10134
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 1_0134 Marker name in barley OPA1 = 12_10134 Original SNP name = 1622-214 Most representative HarvEST:Barley Assembly #32 Unigene = 1622 Most representative HarvEST:Barley Assembly #35 Unigene = 15032 HarvEST Unigene 35 Probe Set = Contig2371_at; Contig2373_s_at; HI02E24u_s_at Unigene 35 Rice Locus = LOC_Os05g40820 Description for best rice BLAST hit to Unigene 35 member = 60S ribosomal protein L24, putative, expressed; E value = 5E-82 Marker name in barley OPA2 = 12_10134 HarvEST Unigene 35 Probe Set = Contig2371_at, Contig2373_s_at, HI02E24u_s_at Description for best rice BLAST hit to Unigene 35 member = protein 60S ribosomal protein L24, putative, expressed; E value = 5E-82 BLAST hit in the rice genome = 60S ribosomal protein L24, putative, expressed
Probe for Locus	HAR35_15032
Locus	POPA1_0134 POPA2_0218
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare