GrainGenes Marker Report: POPA1_0145
Locus
POPA1_0145
Type
SNP
Chromosome
6H
Chromosome Arm
6HL
Map
Barley-Core-2014_6H 126.11 Hordeum-OPA-2009-6H 123.84 Hordeum-OPA123-2008-6H 123.84 Hordeum-OPAConsensus-2011-6H 133.9
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe
HAR35_770
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_0145 Most representative HarvEST:Barley Assembly #32 Unigene = 1689 Most representative HarvEST:Barley Assembly #35 Unigene = 770 HarvEST Unigene 35 Probe Set = Contig2488_s_at; Contig2489_at Unigene 35 Rice Locus = LOC_Os10g38160 Original SNP name = 1689-919 HarvEST Unigene 35 Probe Set = Contig2488_s_at, Contig2489_at Description for best rice BLAST hit to Unigene 35 member = protein glutathione S-transferase GSTU6, putative, expressed; E value = 8E-81 BLAST hit in the rice genome = glutathione S-transferase GSTU6, putative, expressed
Probe for Locus
HAR35_770
Locus
POPA1_0145 POPA2_0231
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA1_0145
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