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GrainGenes Marker Report: POPA1_0159

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Locus
POPA1_0159
Type
SNP
Synonym
Other name12_10159
BOPA2_12_10159
Synonym12_10159
Chromosome
1H
Chromosome Arm
1HS
Map
Barley, 2012 9KSNP 1H47.7
Hordeum-OPA-2009-1H49.7
Hordeum-OPA123-2008-1H49.7
Hordeum-OPAConsensus-2011-1H42.42
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Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_15052
i_12_10159
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 1_0159
Marker name in barley OPA1 = 12_10159
Original SNP name = 1749-948
Most representative HarvEST:Barley Assembly #32 Unigene = 1749
Most representative HarvEST:Barley Assembly #35 Unigene = 15052
HarvEST Unigene 35 Probe Set = Contig2575_s_at; Contig2576_at; HI08H03r_s_at
Unigene 35 Rice Locus = LOC_Os05g06430
Marker name in barley OPA2 = 12_10159
Original SNP name = U32_2509_1666
HarvEST Unigene 35 Probe Set = Contig2575_s_at, Contig2576_at, HI08H03r_s_at
Description for best rice BLAST hit to Unigene 35 member = protein OsPDIL2-1 - Oryza sativa protein disulfide isomerase, expressed; E value = 1E-178
BLAST hit in the rice genome = OsPDIL2-1 - Oryza sativa protein disulfide isomerase, expressed


Probe for Locus
HAR35_15052
Locus
POPA1_0159
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare