GrainGenes Marker Report: POPA1_0172
Locus
POPA1_0172
Type
SNP
Synonym
Synonym 11_10172
Chromosome
3H
Chromosome Arm
3HL
Map
Hordeum-OPA-2009-3H 69.6 Hordeum-OPA123-2008-3H 69.6 Hordeum-OPAConsensus-2011-3H 82.62
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe
HAR35_15085
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0172 Marker name in barley OPA1 = 11_10172 Original SNP name = 1827-958 Most representative HarvEST:Barley Assembly #32 Unigene = 1827 Most representative HarvEST:Barley Assembly #35 Unigene = 15085 HarvEST Unigene 35 Probe Set = Contig2753_at; HK04L12r_s_at Unigene 35 Rice Locus = LOC_Os01g53520 Description for best rice BLAST hit to Unigene 35 member = seed maturation protein, putative, expressed; E value = 1E-118 HarvEST Unigene 35 Probe Set = Contig2753_at, HK04L12r_s_at Description for best rice BLAST hit to Unigene 35 member = protein seed maturation protein, putative, expressed; E value = 1E-118 BLAST hit in the rice genome = seed maturation protein, putative, expressed
Probe for Locus
HAR35_15085
Locus
POPA1_0172
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA1_0172
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
| ||||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
|