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GrainGenes Marker Report: POPA1_0179

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Locus	POPA1_0179
Type	SNP
Synonym	Other name 12_10179 BOPA2_12_10179 Synonym 12_10179
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_13732 i_12_10179
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_0179 Marker name in barley OPA1 = 12_10179 Original SNP name = 1863-1107 Most representative HarvEST:Barley Assembly #32 Unigene = 1863 Most representative HarvEST:Barley Assembly #35 Unigene = 13732 HarvEST Unigene 35 Probe Set = Contig2776_at; HD04M06r_at; HT11A06u_s_at Unigene 35 Rice Locus = LOC_Os03g53230 Description for best rice BLAST hit to Unigene 35 member = bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase, putative, expressed; E value = 0 BLAST hit in the rice genome = bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase, putative, expressed
Probe for Locus	HAR35_13732
Locus	POPA2_0259 POPA1_0179
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare