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GrainGenes Marker Report: POPA1_0182

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Locus
POPA1_0182
Type
SNP
Synonym
Other name11_10182
BOPA1_11_10182
BOPA1_1894-2132
Synonym11_10182
Chromosome
7H
Chromosome Arm
7HL
Map
Hordeum-OPA-2009-7H128.36
Hordeum-OPA123-2008-7H128.36
Hordeum-OPAConsensus-2011-7H129.32
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_15178
i_11_10182
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 10 ]
Marker name in barley Pilot OPA1 = 1_0182
Marker name in barley OPA1 = 11_10182
Original SNP name = 1894-2132
Most representative HarvEST:Barley Assembly #32 Unigene = 1894
Most representative HarvEST:Barley Assembly #35 Unigene = 15178
HarvEST Unigene 35 Probe Set = Contig2786_at
Unigene 35 Rice Locus = LOC_Os06g45120
Description for best rice BLAST hit to Unigene 35 member = vacuolar ATP synthase catalytic subunit A, putative, expressed; E value = 0
Description for best rice BLAST hit to Unigene 35 member = protein vacuolar ATP synthase catalytic subunit A, putative, expressed; E value = 0
BLAST hit in the rice genome = vacuolar ATP synthase catalytic subunit A, putative, expressed


Probe for Locus
HAR35_15178
Locus
POPA1_0182
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare