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GrainGenes Marker Report: POPA1_0185

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Locus
POPA1_0185
Type
SNP
Synonym
Other name11_10185
BOPA1_11_10185
BOPA1_1899-739
Synonym11_10185
Chromosome
6H
Chromosome Arm
6HL
Map
Hordeum-OPA-2009-6H81.88
Hordeum-OPA123-2008-6H81.88
Hordeum-OPAConsensus-2011-6H93.44
Hordeum-OWB-OPA2008-6H102.945
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_843
i_11_10185
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 1_0185
Marker name in barley OPA1 = 11_10185
Original SNP name = 1899-739
Most representative HarvEST:Barley Assembly #32 Unigene = 1899
Most representative HarvEST:Barley Assembly #35 Unigene = 843
HarvEST Unigene 35 Probe Set = Contig2778_at; EBem09_SQ001_L06_s_at
Unigene 35 Rice Locus = LOC_Os02g52290
HarvEST Unigene 35 Probe Set = Contig2778_at, EBem09_SQ001_L06_s_at
Description for best rice BLAST hit to Unigene 35 member = protein peptidyl-prolyl isomerase FKBP12, putative, expressed; E value = 2E-51
BLAST hit in the rice genome = peptidyl-prolyl isomerase FKBP12, putative, expressed


Probe for Locus
HAR35_843
Locus
POPA1_0185
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare