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GrainGenes Marker Report: POPA1_0188

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Locus	POPA1_0188
Type	SNP
Synonym	Other name 12_10188 BOPA2_12_10188 Synonym 12_10188
Chromosome	3H
Chromosome Arm	3HL
Map	Hordeum-OPA-2009-3H 130.82 Hordeum-OPA123-2008-3H 130.82 Hordeum-OPAConsensus-2011-3H 137.74
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_1529 i_12_10188
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 1_0188 Marker name in barley OPA1 = 12_10188 Original SNP name = 191-346 Most representative HarvEST:Barley Assembly #32 Unigene = 191 Most representative HarvEST:Barley Assembly #35 Unigene = 1529 HarvEST Unigene 35 Probe Set = Contig658_at; Contig658_s_at Unigene 35 Rice Locus = LOC_Os01g68320 Description for best rice BLAST hit to Unigene 35 member = ATP-dependent RNA helicase dbp2, putative, expressed; E value = 9E-45 Marker name in barley OPA2 = 12_10188 HarvEST Unigene 35 Probe Set = Contig658_at, Contig658_s_at Description for best rice BLAST hit to Unigene 35 member = protein ATP-dependent RNA helicase dbp2, putative, expressed; E value = 9E-45 BLAST hit in the rice genome = ATP-dependent RNA helicase dbp2, putative, expressed
Probe for Locus	HAR35_1529
Locus	POPA1_0188
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare