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GrainGenes Marker Report: POPA1_0202

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Locus	POPA1_0202
Type	SNP
Synonym	Other name 11_10202 BOPA1_11_10202 BOPA1_1969-1322 Synonym 11_10202
Chromosome	6H
Chromosome Arm	6HL
Map	Hordeum-OPA-2009-6H 90.15 Hordeum-OPA123-2008-6H 90.15 Hordeum-OPAConsensus-2011-6H 102.62 Hordeum-OWB-OPA2008-6H 112.901
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_15188 i_11_10202
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0202 Marker name in barley OPA1 = 11_10202 Original SNP name = 1969-1322 Most representative HarvEST:Barley Assembly #32 Unigene = 1969 Most representative HarvEST:Barley Assembly #35 Unigene = 15188 HarvEST Unigene 35 Probe Set = Contig2907_s_at; Contig2908_at; rbags16k21_s_at Unigene 35 Rice Locus = LOC_Os02g52860 Description for best rice BLAST hit to Unigene 35 member = phosphate carrier protein, mitochondrial precursor, putative, expressed; E value = 0 HarvEST Unigene 35 Probe Set = Contig2907_s_at, Contig2908_at, rbags16k21_s_at Description for best rice BLAST hit to Unigene 35 member = protein phosphate carrier protein, mitochondrial precursor, putative, expressed; E value = 0 BLAST hit in the rice genome = phosphate carrier protein, mitochondrial precursor, putative, expressed
Probe for Locus	HAR35_15188
Locus	POPA1_0202
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare