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GrainGenes Marker Report: POPA1_0213

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Locus	POPA1_0213
Type	SNP
Synonym	Synonym 11_10213
Chromosome	2H
Chromosome Arm	2HL
Map	Hordeum-OPA-2009-2H 86.63 Hordeum-OPA123-2008-2H 86.63 Hordeum-OPAConsensus-2011-2H 99.39
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_15268
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 1_0213 Marker name in barley OPA1 = 11_10213 Original SNP name = 2017-635 Most representative HarvEST:Barley Assembly #32 Unigene = 2017 Most representative HarvEST:Barley Assembly #35 Unigene = 15268 HarvEST Unigene 35 Probe Set = Contig2972_at; rbaak22p05_s_at; rbaal33f21_s_at Unigene 35 Rice Locus = LOC_Os08g27850 Description for best rice BLAST hit to Unigene 35 member = endothelial differentiation-related factor 1, putative, expressed; E value = 8E-68 Original SNP name = OSU_VRS1_HvHox1_802 HarvEST Unigene 35 Probe Set = Contig2972_at, rbaak22p05_s_at, rbaal33f21_s_at Description for best rice BLAST hit to Unigene 35 member = protein endothelial differentiation-related factor 1, putative, expressed; E value = 8E-68 BLAST hit in the rice genome = endothelial differentiation-related factor 1, putative, expressed
Probe for Locus	HAR35_15268
Locus	POPA1_0213
Synonym	Synonym BCD1819
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare