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GrainGenes Marker Report: POPA1_0222

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Locus	POPA1_0222
Type	SNP
Synonym	Other name 12_10222 BOPA2_12_10222 Synonym 12_10222
Chromosome	7H
Chromosome Arm	7HS
Map	Barley, 2012 9KSNP 7H 70.7 Hordeum-OPA-2009-7H 77.85 Hordeum-OPA123-2008-7H 77.85 Hordeum-OPAConsensus-2011-7H 81.78
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_15293 i_12_10222
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 1_0222 Marker name in barley OPA1 = 12_10222 Original SNP name = 2060-422 Most representative HarvEST:Barley Assembly #32 Unigene = 2060 Most representative HarvEST:Barley Assembly #35 Unigene = 15293 HarvEST Unigene 35 Probe Set = M58754_at; M58754_s_at Unigene 35 Rice Locus = LOC_Os08g43580 Description for best rice BLAST hit to Unigene 35 member = acyl carrier protein 3, chloroplast precursor, putative, expressed; E value = 1E-55 Marker name in barley OPA2 = 12_10222 HarvEST Unigene 35 Probe Set = M58754_at, M58754_s_at Description for best rice BLAST hit to Unigene 35 member = protein acyl carrier protein 3, chloroplast precursor, putative, expressed; E value = 1E-55 BLAST hit in the rice genome = acyl carrier protein 3, chloroplast precursor, putative, expressed
Probe for Locus	HAR35_15293
Locus	POPA1_0222
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare