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GrainGenes Marker Report: POPA1_0224

Locus
POPA1_0224
Type
SNP
Synonym
Other name11_10224
BOPA1_11_10224
BOPA1_2066-1133
Synonym11_10224
Chromosome
3H
Chromosome Arm
3HL
Map
Barley, 2012 9KSNP 3H51.8
Hordeum-OPA-2009-3H56.4
Hordeum-OPA123-2008-3H56.4
Hordeum-OPAConsensus-2011-3H67.27
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_15396
i_11_10224
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 10 ]
Marker name in barley Pilot OPA1 = 1_0224
Marker name in barley OPA1 = 11_10224
Original SNP name = 2066-1133
Most representative HarvEST:Barley Assembly #32 Unigene = 2066
Most representative HarvEST:Barley Assembly #35 Unigene = 15396
HarvEST Unigene 35 Probe Set = S69616_s_at
Unigene 35 Rice Locus = LOC_Os01g44260
Description for best rice BLAST hit to Unigene 35 member = dihydroflavonol-4-reductase, putative, expressed; E value = 1E-118
Description for best rice BLAST hit to Unigene 35 member = protein dihydroflavonol-4-reductase, putative, expressed; E value = 1E-118
BLAST hit in the rice genome = dihydroflavonol-4-reductase, putative, expressed


Probe for Locus
HAR35_15396
Locus
POPA1_0224
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare