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GrainGenes Marker Report: POPA1_0228

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Locus
POPA1_0228
Type
SNP
Synonym
Other name12_10228
BOPA2_12_10228
Synonym12_10228
Chromosome
5H
Chromosome Arm
5HL
Map
Hordeum-OPA-2009-5H129.41
Hordeum-OPA123-2008-5H129.41
Hordeum-OPAConsensus-2011-5H121.67
Hordeum-OWB-OPA2008-5H154.045
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_14089
i_12_10228
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 1_0228
Marker name in barley OPA1 = 12_10228
Original SNP name = 211-1181
Most representative HarvEST:Barley Assembly #32 Unigene = 211
Most representative HarvEST:Barley Assembly #35 Unigene = 14089
HarvEST Unigene 35 Probe Set = Contig314_at; HA18O08r_s_at
Unigene 35 Rice Locus = LOC_Os03g44150
Marker name in barley OPA2 = 12_10228
HarvEST Unigene 35 Probe Set = Contig314_at, HA18O08r_s_at
Description for best rice BLAST hit to Unigene 35 member = protein ornithine aminotransferase, putative, expressed; E value = 0
BLAST hit in the rice genome = ornithine aminotransferase, putative, expressed


Probe for Locus
HAR35_14089
Locus
POPA2_0300
POPA1_0228
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare