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GrainGenes Marker Report: POPA1_0234

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Locus	POPA1_0234
Type	SNP
Synonym	Other name 11_10234 BOPA1_11_10234 BOPA1_2128-874 Synonym 11_10234
Chromosome	2H
Chromosome Arm	2HS
Map	Barley, 2012 9KSNP 2H 50.9 Hordeum-OPA-2009-2H 51.75 Hordeum-OPA123-2008-2H 51.75 Hordeum-OPAConsensus-2011-2H 54.27
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_15458 i_11_10234
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0234 Marker name in barley OPA1 = 11_10234 Original SNP name = 2128-874 Most representative HarvEST:Barley Assembly #32 Unigene = 2128 Most representative HarvEST:Barley Assembly #35 Unigene = 15458 HarvEST Unigene 35 Probe Set = Contig3173_at; Contig3173_s_at Unigene 35 Rice Locus = LOC_Os07g44180 Description for best rice BLAST hit to Unigene 35 member = hydrophobic protein LTI6A, putative, expressed; E value = 2E-24 HarvEST Unigene 35 Probe Set = Contig3173_at, Contig3173_s_at Description for best rice BLAST hit to Unigene 35 member = protein hydrophobic protein LTI6A, putative, expressed; E value = 2E-24 BLAST hit in the rice genome = hydrophobic protein LTI6A, putative, expressed
Probe for Locus	HAR35_15458
Locus	POPA1_0234
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare