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GrainGenes Marker Report: POPA1_0240

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Locus	POPA1_0240
Type	SNP
Synonym	Other name 11_10240 BOPA1_11_10240 BOPA1_2168-111 Synonym 11_10240
Chromosome	5H
Chromosome Arm	5HS
Map	Hordeum-OPA-2009-5H 51 Hordeum-OPA123-2008-5H 51 Hordeum-OPAConsensus-2011-5H 42.41 Hordeum-OWB-OPA2008-5H 58.35
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_1123 i_11_10240
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_0240 Marker name in barley OPA1 = 11_10240 Original SNP name = 2168-111 Most representative HarvEST:Barley Assembly #32 Unigene = 2168 Most representative HarvEST:Barley Assembly #35 Unigene = 1123 HarvEST Unigene 35 Probe Set = Contig3171_at Unigene 35 Rice Locus = LOC_Os12g08730 Description for best rice BLAST hit to Unigene 35 member = thioredoxin M-type, chloroplast precursor, putative, expressed; E value = 6E-66 Description for best rice BLAST hit to Unigene 35 member = protein thioredoxin M-type, chloroplast precursor, putative, expressed; E value = 6E-66 BLAST hit in the rice genome = thioredoxin M-type, chloroplast precursor, putative, expressed
Probe for Locus	HAR35_1123
Locus	POPA1_0240
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare