Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA1_0247

[Submit comment/correction]

Locus	POPA1_0247
Type	SNP
Synonym	Other name 11_10247 BOPA1_11_10247 BOPA1_2196-195 Synonym 11_10247
Chromosome	4H
Chromosome Arm	4HL
Map	Hordeum-OPAConsensus-2011-4H 87.01
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus
Species	Hordeum vulgare
Probe	HAR35_15288 i_11_10247
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_0247 Marker name in barley OPA1 = 11_10247 Original SNP name = 2196-195 Most representative HarvEST:Barley Assembly #32 Unigene = 2196 Most representative HarvEST:Barley Assembly #35 Unigene = 15288 HarvEST Unigene 35 Probe Set = HV_CEb0002J23r2_s_at Unigene 35 Rice Locus = LOC_Os09g39940 Description for best rice BLAST hit to Unigene 35 member = blue copper protein precursor, putative, expressed; E value = 1E-45 BLAST hit in the rice genome = blue copper protein precursor, putative, expressed
Probe for Locus	HAR35_15288
Locus	POPA1_0247