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GrainGenes Marker Report: POPA1_0251

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Locus	POPA1_0251
Type	SNP
Synonym	Other name 11_10251 BOPA1_11_10251 BOPA1_2223-1688 Synonym 11_10251
Chromosome	5H
Chromosome Arm	5HL
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_1049 i_11_10251
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_0251 Marker name in barley OPA1 = 11_10251 Original SNP name = 2223-1688 Most representative HarvEST:Barley Assembly #32 Unigene = 2223 Most representative HarvEST:Barley Assembly #35 Unigene = 1049 HarvEST Unigene 35 Probe Set = Contig3235_at; Contig3235_s_at; Contig3237_s_at; Contig3237_x_at Unigene 35 Rice Locus = LOC_Os03g60090 Description for best rice BLAST hit to Unigene 35 member = methylenetetrahydrofolate reductase, putative, expressed; E value = 0 BLAST hit in the rice genome = methylenetetrahydrofolate reductase, putative, expressed
Probe for Locus	HAR35_1049
Locus	POPA1_0251