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GrainGenes Marker Report: POPA1_0260

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Locus
POPA1_0260
Type
SNP
Synonym
Other name11_10260
BOPA1_11_10260
BOPA1_2267-1173
Synonym11_10260
Chromosome
5H
Chromosome Arm
5HS
Map
Barley, 2012 9KSNP 5H41.3
Hordeum-OPA-2009-5H46.23
Hordeum-OPA123-2008-5H46.23
Hordeum-OPAConsensus-2011-5H38.78
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_15470
i_11_10260
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 1_0260
Marker name in barley OPA1 = 11_10260
Original SNP name = 2267-1173
Most representative HarvEST:Barley Assembly #32 Unigene = 2267
Most representative HarvEST:Barley Assembly #35 Unigene = 15470
HarvEST Unigene 35 Probe Set = Contig3310_at; HVSMEl0014E16r2_s_at
Unigene 35 Rice Locus = LOC_Os12g41390
HarvEST Unigene 35 Probe Set = Contig3310_at, HVSMEl0014E16r2_s_at
Description for best rice BLAST hit to Unigene 35 member = protein homocysteine S-methyltransferase 3, putative, expressed; E value = 1E-168
BLAST hit in the rice genome = homocysteine S-methyltransferase 3, putative, expressed


Probe for Locus
HAR35_15470
Locus
POPA1_0260
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare