Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA1_0270

[Submit comment/correction]

Locus	POPA1_0270
Type	SNP
Synonym	Other name 11_10270 BOPA1_11_10270 BOPA1_2298-1526 Synonym 11_10270
Chromosome	6H
Chromosome Arm	6HL
Map	Hordeum-OPA-2009-6H 60.23 Hordeum-OPA123-2008-6H 60.23 Hordeum-OPAConsensus-2011-6H 64.65
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_15495 i_11_10270
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_0270 Marker name in barley OPA1 = 11_10270 Original SNP name = 2298-1526 Most representative HarvEST:Barley Assembly #32 Unigene = 2298 Most representative HarvEST:Barley Assembly #35 Unigene = 15495 HarvEST Unigene 35 Probe Set = Contig3357_at Unigene 35 Rice Locus = LOC_Os02g43020 Description for best rice BLAST hit to Unigene 35 member = heat shock protein STI, putative, expressed; E value = 0 Description for best rice BLAST hit to Unigene 35 member = protein heat shock protein STI, putative, expressed; E value = 0 BLAST hit in the rice genome = heat shock protein STI, putative, expressed
Probe for Locus	HAR35_15495
Locus	POPA1_0270
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare