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GrainGenes Marker Report: POPA1_0276

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Locus	POPA1_0276
Type	SNP
Synonym	Other name 11_10276 BOPA1_11_10276 BOPA1_2315-702 Synonym 11_10276
Chromosome	3H
Chromosome Arm	3HL
Map	Hordeum-OPA-2009-3H 74.78 Hordeum-OPA123-2008-3H 74.78 Hordeum-OPAConsensus-2011-3H 86.57
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_15496 i_11_10276
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0276 Marker name in barley OPA1 = 11_10276 Original SNP name = 2315-702 Most representative HarvEST:Barley Assembly #32 Unigene = 2315 Most representative HarvEST:Barley Assembly #35 Unigene = 15496 HarvEST Unigene 35 Probe Set = Contig3345_at; rbaal23n02_s_at Unigene 35 Rice Locus = LOC_Os01g54920 Description for best rice BLAST hit to Unigene 35 member = heat- and acid-stable phosphoprotein, putative, expressed; E value = 3E-78 HarvEST Unigene 35 Probe Set = Contig3345_at, rbaal23n02_s_at Description for best rice BLAST hit to Unigene 35 member = protein heat- and acid-stable phosphoprotein, putative, expressed; E value = 3E-78 BLAST hit in the rice genome = heat- and acid-stable phosphoprotein, putative, expressed
Probe for Locus	HAR35_15496
Locus	POPA1_0276
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare