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GrainGenes Marker Report: POPA1_0277

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Locus	POPA1_0277
Type	SNP
Chromosome	3H
Chromosome Arm	3HS
Map	Barley-Core-2014_3H 44.82 Hordeum-OPA-2009-3H 37.17 Hordeum-OPA123-2008-3H 37.17 Hordeum-OPAConsensus-2011-3H 37.62
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe	HAR35_1149
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_0277 Most representative HarvEST:Barley Assembly #32 Unigene = 2316 Most representative HarvEST:Barley Assembly #35 Unigene = 1149 HarvEST Unigene 35 Probe Set = Contig3379_at Unigene 35 Rice Locus = LOC_Os01g01307 Description for best rice BLAST hit to Unigene 35 member = translocon-associated protein beta containing protein, expressed; E value = 9E-82 Original SNP name = 2316-563 Original SNP name = SCRI_abc21967_01_1 Description for best rice BLAST hit to Unigene 35 member = protein translocon-associated protein beta containing protein, expressed; E value = 9E-82 BLAST hit in the rice genome = translocon-associated protein beta containing protein, expressed
Probe for Locus	HAR35_1149
Locus	POPA1_0277 POPA2_0338
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare