Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA1_0278

[Submit comment/correction]

Locus	POPA1_0278
Type	SNP
Synonym	Other name 12_10278 BOPA2_12_10278 Synonym 12_10278
Chromosome	6H
Chromosome Arm	6HL
Map	Hordeum-OPA-2009-6H 55.94 Hordeum-OPA123-2008-6H 55.94 Hordeum-OPAConsensus-2011-6H 60.65 Hordeum-OWB-OPA2008-6H 68.506
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_1167 i_12_10278
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0278 Marker name in barley OPA1 = 12_10278 Original SNP name = 2327-126 Most representative HarvEST:Barley Assembly #32 Unigene = 2327 Most representative HarvEST:Barley Assembly #35 Unigene = 1167 HarvEST Unigene 35 Probe Set = Contig3401_at Unigene 35 Rice Locus = LOC_Os02g19820 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 1E-118 Marker name in barley OPA2 = 12_10278 Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 1E-118 BLAST hit in the rice genome = expressed protein
Probe for Locus	HAR35_1167
Locus	POPA1_0278 POPA2_0341
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare