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GrainGenes Marker Report: POPA1_0280

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Locus
POPA1_0280
Type
SNP
Synonym
Other name11_10280
BOPA1_11_10280
BOPA1_2335-1614
Synonym11_10280
Chromosome
3H
Chromosome Arm
3HL
Map
Hordeum-OPA-2009-3H130.19
Hordeum-OPA123-2008-3H130.19
Hordeum-OPAConsensus-2011-3H136.92
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_15666
i_11_10280
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 1_0280
Marker name in barley OPA1 = 11_10280
Original SNP name = 2335-1614
Most representative HarvEST:Barley Assembly #32 Unigene = 2335
Most representative HarvEST:Barley Assembly #35 Unigene = 15666
HarvEST Unigene 35 Probe Set = Contig3413_s_at; Contig3414_s_at
Unigene 35 Rice Locus = LOC_Os02g19510
Description for best rice BLAST hit to Unigene 35 member = lysine ketoglutarate reductase trans-splicing related 1, putative, expressed; E value = 0
HarvEST Unigene 35 Probe Set = Contig3413_s_at, Contig3414_s_at
Description for best rice BLAST hit to Unigene 35 member = protein lysine ketoglutarate reductase trans-splicing related 1, putative, expressed; E value = 0
BLAST hit in the rice genome = lysine ketoglutarate reductase trans-splicing related 1, putative, expressed


Probe for Locus
HAR35_15666
Locus
POPA1_0280
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare