Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA1_0289

[Submit comment/correction]

Locus	POPA1_0289
Type	SNP
Synonym	Other name 11_10289 BOPA1_11_10289 BOPA1_237-534 Synonym 11_10289
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_13937 i_11_10289
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_0289 Marker name in barley OPA1 = 11_10289 Original SNP name = 237-534 Most representative HarvEST:Barley Assembly #32 Unigene = 237 Most representative HarvEST:Barley Assembly #35 Unigene = 13937 HarvEST Unigene 35 Probe Set = Contig350_x_at Unigene 35 Rice Locus = LOC_Os12g34510 Description for best rice BLAST hit to Unigene 35 member = histone H2A, putative, expressed; E value = 1E-59 BLAST hit in the rice genome = histone H2A, putative, expressed
Probe for Locus	HAR35_13937
Locus	POPA1_0289 POPA3_0831 POPA2_0352
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare