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GrainGenes Marker Report: POPA1_0292

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Locus	POPA1_0292
Type	SNP
Synonym	Synonym 11_10292
Chromosome	5H
Chromosome Arm	5HL
Map	Hordeum-OPA-2009-5H 144.63 Hordeum-OPA123-2008-5H 144.63 Hordeum-OPAConsensus-2011-5H 139.63
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_15429
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0292 Marker name in barley OPA1 = 11_10292 Original SNP name = 2395-2083 Most representative HarvEST:Barley Assembly #32 Unigene = 2395 Most representative HarvEST:Barley Assembly #35 Unigene = 15429 HarvEST Unigene 35 Probe Set = Contig3477_at; HM12O22r_s_at Unigene 35 Rice Locus = LOC_Os07g04240 Description for best rice BLAST hit to Unigene 35 member = succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, putative, expressed; E value = 0 HarvEST Unigene 35 Probe Set = Contig3477_at, HM12O22r_s_at Description for best rice BLAST hit to Unigene 35 member = protein succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, putative, expressed; E value = 0 BLAST hit in the rice genome = succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, putative, expressed
Probe for Locus	HAR35_15429
Locus	POPA1_0292
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare