Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA1_0301

[Submit comment/correction]

Locus	POPA1_0301
Type	SNP
Synonym	Other name 11_10301 BOPA1_11_10301 BOPA1_2444-437 Synonym 11_10301
Chromosome	7H
Chromosome Arm	7HL
Map	Hordeum-OPAConsensus-2011-7H 101.52
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus
Species	Hordeum vulgare
Probe	HAR35_15526 i_11_10301
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_0301 Marker name in barley OPA1 = 11_10301 Original SNP name = 2444-437 Most representative HarvEST:Barley Assembly #32 Unigene = 2444 Most representative HarvEST:Barley Assembly #35 Unigene = 15526 HarvEST Unigene 35 Probe Set = Contig3535_at; Contig3535_s_at Unigene 35 Rice Locus = LOC_Os01g13080 Description for best rice BLAST hit to Unigene 35 member = 60S acidic ribosomal protein P3, putative, expressed; E value = 4E-47 BLAST hit in the rice genome = 60S acidic ribosomal protein P3, putative, expressed
Probe for Locus	HAR35_15526
Locus	POPA1_0301