GrainGenes Marker Report: POPA1_0308
Locus
POPA1_0308
Type
SNP
Synonym
Synonym 12_10308
Map Data
Barley, OPA 2009, Consensus
Probe
HAR35_15562
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark
[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_0308 Marker name in barley OPA1 = 12_10308 Original SNP name = 2481-1357 Most representative HarvEST:Barley Assembly #32 Unigene = 2481 Most representative HarvEST:Barley Assembly #35 Unigene = 15562 HarvEST Unigene 35 Probe Set = Contig3606_at; rbah36l17_s_at Unigene 35 Rice Locus = LOC_Os08g09940 Description for best rice BLAST hit to Unigene 35 member = GTP-binding protein PTD004, putative, expressed; E value = 0 BLAST hit in the rice genome = GTP-binding protein PTD004, putative, expressed
Probe for Locus
HAR35_15562
Locus
POPA1_0308 POPA2_0369
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA1_0308
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