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GrainGenes Marker Report: POPA1_0313

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Locus	POPA1_0313
Type	SNP
Synonym	Other name 12_10313 BOPA2_12_10313 Synonym 12_10313
Chromosome	1H
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_1297 i_12_10313
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_0313 Marker name in barley OPA1 = 12_10313 Original SNP name = 2504-1413 Most representative HarvEST:Barley Assembly #32 Unigene = 2504 Most representative HarvEST:Barley Assembly #35 Unigene = 1297 HarvEST Unigene 35 Probe Set = Contig3621_at; HV09N10u_s_at; HVSMEi0010A19r2_s_at Unigene 35 Rice Locus = LOC_Os05g24594 Description for best rice BLAST hit to Unigene 35 member = coatomer subunit delta, putative, expressed; E value = 0 BLAST hit in the rice genome = coatomer subunit delta, putative, expressed
Probe for Locus	HAR35_1297
Locus	POPA1_0313
Synonym	Synonym CDO473
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare