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GrainGenes Marker Report: POPA1_0324

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Locus	POPA1_0324
Type	SNP
Synonym	Other name 11_10324 BOPA1_11_10324 BOPA1_2577-1122 Synonym 11_10324
Chromosome	1H
Chromosome Arm	1HL
Map	Hordeum-OPA-2009-1H 57.01 Hordeum-OPA123-2008-1H 57.01 Hordeum-OPAConsensus-2011-1H 50.54
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_15598 i_11_10324
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0324 Marker name in barley OPA1 = 11_10324 Original SNP name = 2577-1122 Most representative HarvEST:Barley Assembly #32 Unigene = 2577 Most representative HarvEST:Barley Assembly #35 Unigene = 15598 HarvEST Unigene 35 Probe Set = Contig3709_at; Contig3709_s_at; HT08J05u_at Unigene 35 Rice Locus = LOC_Os02g49320 Description for best rice BLAST hit to Unigene 35 member = sucrose cleavage protein-like, putative, expressed; E value = 1E-179 HarvEST Unigene 35 Probe Set = Contig3709_at, Contig3709_s_at, HT08J05u_at Description for best rice BLAST hit to Unigene 35 member = protein sucrose cleavage protein-like, putative, expressed; E value = 1E-179 BLAST hit in the rice genome = sucrose cleavage protein-like, putative, expressed
Probe for Locus	HAR35_15598
Locus	POPA1_0324
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare