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GrainGenes Marker Report: POPA1_0332

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Locus	POPA1_0332
Type	SNP
Synonym	Synonym 11_10332
Chromosome	1H
Chromosome Arm	1HS
Map	Hordeum-OPA-2009-1H 15.4 Hordeum-OPA123-2008-1H 15.4 Hordeum-OPAConsensus-2011-1H 11.66
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_14245
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_0332 Marker name in barley OPA1 = 11_10332 Original SNP name = 2609-350 Most representative HarvEST:Barley Assembly #32 Unigene = 2609 Most representative HarvEST:Barley Assembly #35 Unigene = 14245 HarvEST Unigene 35 Probe Set = Contig3789_s_at Unigene 35 Rice Locus = LOC_Os05g02060 Description for best rice BLAST hit to Unigene 35 member = amino acid selective channel protein, putative, expressed; E value = 2E-60 Description for best rice BLAST hit to Unigene 35 member = protein amino acid selective channel protein, putative, expressed; E value = 2E-60 BLAST hit in the rice genome = amino acid selective channel protein, putative, expressed
Probe for Locus	HAR35_14245
Locus	POPA1_0332
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare