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GrainGenes Marker Report: POPA1_0336

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Locus	POPA1_0336
Type	SNP
Synonym	Other name 11_10336 BOPA1_11_10336 BOPA1_2617-1234 Synonym 11_10336
Chromosome	5H
Chromosome Arm	5HL
Map	Barley, 2012 9KSNP 5H 149.1 Hordeum-OPA-2009-5H 161.58 Hordeum-OPA123-2008-5H 161.58 Hordeum-OPAConsensus-2011-5H 157.61 Hordeum-OWB-OPA2008-5H 196.153
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_738 i_11_10336
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0336 Marker name in barley OPA1 = 11_10336 Original SNP name = 2617-1234 Most representative HarvEST:Barley Assembly #32 Unigene = 2617 Most representative HarvEST:Barley Assembly #35 Unigene = 738 HarvEST Unigene 35 Probe Set = Contig3841_at; Contig3841_x_at; rbaal3d15_s_at Unigene 35 Rice Locus = LOC_Os01g36950 Description for best rice BLAST hit to Unigene 35 member = N-rich protein, putative, expressed; E value = 1E-134 HarvEST Unigene 35 Probe Set = Contig3841_at, Contig3841_x_at, rbaal3d15_s_at Description for best rice BLAST hit to Unigene 35 member = protein N-rich protein, putative, expressed; E value = 1E-134 BLAST hit in the rice genome = N-rich protein, putative, expressed
Probe for Locus	HAR35_738
Locus	POPA1_0336
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare