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GrainGenes Marker Report: POPA1_0338

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Locus	POPA1_0338
Type	SNP
Synonym	Other name 11_10338 BOPA1_11_10338 BOPA1_2633-498 Synonym 11_10338
Chromosome	1H
Chromosome Arm	1HL
Map	Hordeum-OPA-2009-1H 117.8 Hordeum-OPA123-2008-1H 117.8 Hordeum-OPAConsensus-2011-1H 118.98 Hordeum-OWB-OPA2008-1H 129.791
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_1019 i_11_10338
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0338 Marker name in barley OPA1 = 11_10338 Original SNP name = 2633-498 Most representative HarvEST:Barley Assembly #32 Unigene = 2633 Most representative HarvEST:Barley Assembly #35 Unigene = 1019 HarvEST Unigene 35 Probe Set = Contig3757_at; Contig3759_s_at Unigene 35 Rice Locus = LOC_Os03g22880 Description for best rice BLAST hit to Unigene 35 member = nucleolar protein Nop56, putative, expressed; E value = 0 HarvEST Unigene 35 Probe Set = Contig3757_at, Contig3759_s_at Description for best rice BLAST hit to Unigene 35 member = protein nucleolar protein Nop56, putative, expressed; E value = 0 BLAST hit in the rice genome = nucleolar protein Nop56, putative, expressed
Probe for Locus	HAR35_1019
Locus	POPA1_0338
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare