Query (optional)   in Class  

GrainGenes Marker Report: POPA1_0346

[Submit comment/correction]

Locus
POPA1_0346
Type
SNP
Synonym
Other name11_10346
BOPA1_11_10346
BOPA1_2669-1012
Synonym11_10346
Chromosome
7H
Chromosome Arm
7HS
Map
Hordeum-OPA-2009-7H61.32
Hordeum-OPA123-2008-7H61.32
Hordeum-OPAConsensus-2011-7H55.64
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_1424
i_11_10346
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 10 ]
Marker name in barley Pilot OPA1 = 1_0346
Marker name in barley OPA1 = 11_10346
Original SNP name = 2669-1012
Most representative HarvEST:Barley Assembly #32 Unigene = 2669
Most representative HarvEST:Barley Assembly #35 Unigene = 1424
HarvEST Unigene 35 Probe Set = Contig3840_at
Unigene 35 Rice Locus = LOC_Os06g09688
Description for best rice BLAST hit to Unigene 35 member = chaperonin, chloroplast precursor, putative, expressed; E value = 5E-75
Description for best rice BLAST hit to Unigene 35 member = protein chaperonin, chloroplast precursor, putative, expressed; E value = 5E-75
BLAST hit in the rice genome = chaperonin, chloroplast precursor, putative, expressed


Probe for Locus
HAR35_1424
Locus
POPA1_0346
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare