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GrainGenes Marker Report: POPA1_0347

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Locus	POPA1_0347
Type	SNP
Synonym	Other name 12_10347 BOPA2_12_10347 Synonym 12_10347
Chromosome	4H
Chromosome Arm	4HS
Map	Hordeum-OPA-2009-4H 38.63 Hordeum-OPA123-2008-4H 38.63 Hordeum-OPAConsensus-2011-4H 43.72 Hordeum-OWB-OPA2008-4H 40.114
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_13762 i_12_10347
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 1_0347 Marker name in barley OPA1 = 12_10347 Original SNP name = 2670-1431 Most representative HarvEST:Barley Assembly #32 Unigene = 2670 Most representative HarvEST:Barley Assembly #35 Unigene = 13762 HarvEST Unigene 35 Probe Set = Contig3848_at; Contig3848_s_at Unigene 35 Rice Locus = LOC_Os03g52170 Description for best rice BLAST hit to Unigene 35 member = 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed; E value = 0 Marker name in barley OPA2 = 12_10347 Original SNP name = SCRI_olad_101 HarvEST Unigene 35 Probe Set = Contig3848_at, Contig3848_s_at Description for best rice BLAST hit to Unigene 35 member = protein 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed; E value = 0 BLAST hit in the rice genome = 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed
Probe for Locus	HAR35_13762
Locus	POPA1_0347
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare