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GrainGenes Marker Report: POPA1_0358

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Locus	POPA1_0358
Type	SNP
Synonym	Other name 11_10358 BOPA1_11_10358 BOPA1_2719-672 Synonym 11_10358
Chromosome	2H
Chromosome Arm	2HL
Map	Hordeum-OPA-2009-2H 59.9 Hordeum-OPA123-2008-2H 59.9 Hordeum-OPAConsensus-2011-2H 67.08
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_1404 i_11_10358
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0358 Marker name in barley OPA1 = 11_10358 Original SNP name = 2719-672 Most representative HarvEST:Barley Assembly #32 Unigene = 2719 Most representative HarvEST:Barley Assembly #35 Unigene = 1404 HarvEST Unigene 35 Probe Set = Contig3892_at Unigene 35 Rice Locus = LOC_Os04g30420 Description for best rice BLAST hit to Unigene 35 member = chloroplastic quinone-oxidoreductase, putative, expressed; E value = 1E-156 Original SNP name = U35_17630_293 Description for best rice BLAST hit to Unigene 35 member = protein chloroplastic quinone-oxidoreductase, putative, expressed; E value = 1E-156 BLAST hit in the rice genome = chloroplastic quinone-oxidoreductase, putative, expressed
Probe for Locus	HAR35_1404
Locus	POPA1_0358
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare