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GrainGenes Marker Report: POPA1_0375

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Locus	POPA1_0375
Type	SNP
Synonym	Synonym 12_10375
Chromosome	7H
Chromosome Arm	7HS
Map	Hordeum-OPA-2009-7H 3.34 Hordeum-OPA123-2008-7H 3.34 Hordeum-OPAConsensus-2011-7H 4.5
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_1552
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 1_0375 Marker name in barley OPA1 = 12_10375 Original SNP name = 2811-81 Most representative HarvEST:Barley Assembly #32 Unigene = 2811 Most representative HarvEST:Barley Assembly #35 Unigene = 1552 HarvEST Unigene 35 Probe Set = Contig4002_s_at Unigene 35 Rice Locus = LOC_Os11g03770 Description for best rice BLAST hit to Unigene 35 member = hypothetical protein; E value = 0.0000000004 Marker name in barley OPA2 = 12_10375 Original SNP name = U35_3681_680 Description for best rice BLAST hit to Unigene 35 member = protein hypothetical protein; E value = 0.0000000004 BLAST hit in the rice genome = hypothetical protein
Probe for Locus	HAR35_1552
Locus	POPA1_0375
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare