Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA1_0391

[Submit comment/correction]

Locus	POPA1_0391
Type	SNP
Synonym	Other name 12_10391 BOPA2_12_10391 Synonym 12_10391
Chromosome	3H
Chromosome Arm	3HS
Map	Hordeum-OPA-2009-3H 54.4 Hordeum-OPA123-2008-3H 54.4 Hordeum-OPAConsensus-2011-3H 65.25 Hordeum-OWB-OPA2008-3H 60.753
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_15851 i_12_10391
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0391 Marker name in barley OPA1 = 12_10391 Original SNP name = 2913-1920 Most representative HarvEST:Barley Assembly #32 Unigene = 2913 Most representative HarvEST:Barley Assembly #35 Unigene = 15851 HarvEST Unigene 35 Probe Set = Contig4129_at Unigene 35 Rice Locus = LOC_Os01g14950 Description for best rice BLAST hit to Unigene 35 member = importin alpha-1b subunit, putative, expressed; E value = 0 Marker name in barley OPA2 = 12_10391 Description for best rice BLAST hit to Unigene 35 member = protein importin alpha-1b subunit, putative, expressed; E value = 0 BLAST hit in the rice genome = importin alpha-1b subunit, putative, expressed
Probe for Locus	HAR35_15851
Locus	POPA1_0391
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare